Sina Berk Golech
Hi there 👋 I’m Sina Berk
🔭 I’m currently working on Bioinformatics specialized in Metagenomics and Metabolomics.
🌱 I’m currently learning Algorithms for Bioinformatics.
👯 I’m looking to collaborate on research about Metabolomics Algorithms.
Still under development
Please contact me for more details.
CV
Education ======
- M.Sc. in Bioinformatics, Saarland University, 2025 (expected)
- B.S. in Genetics and Bioengineering, Istanbul Bilgi University, 2023
- B.S. in Computer Engineering, Istanbul Bilgi University, 2023
Work experience
- Spring 2023: Undergraduate Research Assistant
- Istanbul Bilgi University, Genetics and Bioengineering Department
- Duties includes:
- Focused on data analysis of adults with Philadelphia chromosome–like acute lymphoblastic leukaemia,data mining procedures applied to various datasets to analyze transcriptomic profiles, metabolic activities, and classification of patients with a diverse subgroup of diseases.
- The analyses were conducted in slico with R and Python programming languages with affy, progeny, speed2, and pheatmap.
- Supervisor: Faculty Member, PhD Özlem Ulucan Açan
- Spring 2022: Undergraduate Research Assistant
- Istanbul Bilgi University, Computer Engineering Department
- Duties included:
- The Primary project focused on developing a Turkish image caption dataset with well-known image captioning models and proposing to the research community a benchmark image-caption dataset.
- Used computational methods to develop automatic image captioning generators and models for English and Turkish languages.
- These projects led to the submission of 1 conference publication and presentation; the Computer Engineering thesis was conducted through this project and published a paper in IEEExplore.
- Distributing tasks for the internship members consisting of thirty people, creating jobs, and providing the organization and administration of the database containing the images and the corresponding descriptions using MongoDB.
- Supervisor: Assoc. Prof. Elena Battini Sönmez
Skills
- Programming Languages: Python(Numpy, Pandas, Seaborn, Plotly, sklearn, PyTorch), R(Bioconductor, affy, progeny, speed2, pheatmap), Bash C, C++, Java, Perl, MATLAB, SQL, UML
- Soft Skills: Writing, Project Management, Public Speaking, Leadership, Scrum, Agile
- Languages: English: Professional proficiency, Turkish: Native, German: Beginner
- Tools: Linux, Git, GitHub, \LaTeX, Visual Studio, PyCharm, MS Word, Excel, PP, Canva, Trello
Publications
A complete human verified Turkish caption dataset for MS COCO and performance evaluation with well-known image caption models trained against it
S. B. Golech, S. B. Karacan, E. B. Sönmez and H. Ayral, "A complete human verified Turkish caption dataset for MS COCO and performance evaluation with well-known image caption models trained against it" 2022 International Conference on Electrical, Computer, Communications and Mechatronics Engineering (ICECCME), Maldives, Maldives, 2022, pp. 1-6, doi: 10.1109/ICECCME55909.2022.9988025.
Talks
Conference Proceeding talk 3 on Relevant Topic in Your Field
Conference proceedings talk at Testing Institute of America 2014 Annual Conference, Los Angeles, CA
Talk 2 on Relevant Topic in Your Field
Talk at London School of Testing, London, UK
Tutorial 1 on Relevant Topic in Your Field
Tutorial at UC-Berkeley Institute for Testing Science, Berkeley CA, USA
Talk 1 on Relevant Topic in Your Field
Talk at UC San Francisco, Department of Testing, San Francisco, California